In Dubai, a B-2 bomber flown by a US Air Force pilot under the control of His Voice launches missiles at the city, with 002 in pursuit to intercept. Isaac Gilmore suspects that these were orchestrated by the United States government's National Security Agency, in a bid to regain dominance as a global superpower. We learn that he was about to plant a bomb at the Roppongi Hills Tower, until 005 and 003 came to reactivate his memories. However, Joe is hearing His Voice due to his cybernetic brain. He also has a girlfriend named Tomoe, who seems familiar to him in some way. Joe Shimamura, who had his memories blocked and reset every 3 years by Professor Gilmore, is now a typical high school student, falsely believing that he has an unseen family and friends due to the 'Augmented Reality' implanted in his brain.

The intelligence agencies of the world are all whispering about the incidents being related to His Voice, the unknown entity that is controlling operatives of the bombings. The two agents meet at a bar in New York City to exchange intel about 'His Voice' and Pyunma's findings of a fossil which resembles an angel's skeleton possibly being related to it. 27 years after the 00 Cyborg team disbanded, 007 now works for the British SIS and 002 now works for The USA's NSA after a falling out with the team and Joe. Skyscraper bombings are happening all over the world, by the direction of a force called 'His Voice'. The film takes place in Cyborg 009's future timeline. 009 Re:Cyborg is a 2012 Japanese anime film by Kenji Kamiyama.

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